PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00145503001
Common NameGSBRNA2T00145503001, LOC106444989
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 312aa    MW: 34542.9 Da    PI: 9.5147
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00145503001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.28.9e-3968128262
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                          ++++++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+ss
  GSBRNA2T00145503001  68 PQEKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSS 128
                          6899******************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-3067126IPR003851Zinc finger, Dof-type
PfamPF027017.1E-3370126IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.70572126IPR003851Zinc finger, Dof-type
PROSITE patternPS01361074110IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MINVKPMEQI ISNTSNNTSQ QQQQQQQQQQ TFIATTARPN PNASNGGSGA GNDNNTATTM  60
ESTRKARPQE KVNCPRCNST NTKFCYYNNY SLTQPRYFCK GCRRYWTEGG SLRNVPVGGS  120
SRKNKRSSTP LASPSNPKLP DLNPPFFFAT QIPNKSSKDL NLLSFPVMQD HHHGMSQFLH  180
MPKIENNNTS SSIYASSSHG ASSRGMNTLL PGQMMDSNSV LYSSLGFPTM ADYKQSNNNL  240
SFSIDHHQGI GHNTINNNHR AEDNNHADDM NGASRVLFPF SDTKEFSSTN QEKSHNTYWS  300
GMFSNTGGSS W*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.144949e-72seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00145503001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9794811e-180JN979481.1 Brassica rapa subsp. pekinensis auxin response factor 18-1 (ARF18-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013741908.10.0PREDICTED: dof zinc finger protein DOF3.7-like isoform X3
SwissprotQ433851e-165DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBLA0A078DC190.0A0A078DC19_BRANA; BnaA09g21650D protein
STRINGBra014418.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25282673
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.41e-157Dof family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]